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CD53 CD53 molecule [ Canis lupus familiaris (dog) ]

Gene ID: 100855953, updated on 8-Mar-2024

Summary

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Official Symbol
CD53provided by VGNC
Official Full Name
CD53 moleculeprovided by VGNC
Primary source
VGNC:VGNC:38964
See related
Ensembl:ENSCAFG00845001785
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (41401987..41421177, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (43847669..43866859, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (41528153..41547338, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (41122453..41141639, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (41092762..41111952, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene ligand dependent nuclear receptor interacting factor 1 Neighboring gene aldehyde dehydrogenase, mitochondrial-like Neighboring gene uncharacterized LOC102152052 Neighboring gene olfactory receptor family 11 subfamily I member 1 Neighboring gene mediator of RNA polymerase II transcription subunit 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leukocyte surface antigen CD53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    41401987..41421177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669827.1 → XP_038525755.1  leukocyte surface antigen CD53

    UniProtKB/TrEMBL
    A0A8C0K906, A0A8C0NG38, A0A8C0SFV0, A0A8I3MMD4, A0A8I3RQ75
    Related
    ENSCAFP00845002496.1, ENSCAFT00845003133.1
    Conserved Domains (2) summary
    cd03164
    Location:100 → 182
    CD53_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 202
    Tetraspannin; Tetraspanin family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    41122453..41141639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479755.1 → XP_038335683.1  leukocyte surface antigen CD53

    Conserved Domains (2) summary
    cd03164
    Location:100 → 182
    CD53_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 202
    Tetraspannin; Tetraspanin family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    41092762..41111952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038605153.1 → XP_038461081.1  leukocyte surface antigen CD53

    Conserved Domains (2) summary
    cd03164
    Location:100 → 182
    CD53_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 202
    Tetraspannin; Tetraspanin family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    41528153..41547338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038541026.1 → XP_038396954.1  leukocyte surface antigen CD53

    UniProtKB/TrEMBL
    A0A8C0K906, A0A8C0NG38, A0A8C0SFV0, A0A8I3MMD4, A0A8I3RQ75
    Conserved Domains (2) summary
    cd03164
    Location:100 → 182
    CD53_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 202
    Tetraspannin; Tetraspanin family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    43847669..43866859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003639132.4 → XP_003639180.1  leukocyte surface antigen CD53

    UniProtKB/TrEMBL
    A0A8C0K906, A0A8C0NG38, A0A8C0SFV0, A0A8I3MMD4, A0A8I3RQ75
    Conserved Domains (2) summary
    cd03164
    Location:100 → 182
    CD53_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 202
    Tetraspannin; Tetraspanin family
Nucleotide Protein
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