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TNIP3 TNFAIP3 interacting protein 3 [ Canis lupus familiaris (dog) ]

Gene ID: 100855775, updated on 8-Mar-2024

Summary

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Official Symbol
TNIP3provided by VGNC
Official Full Name
TNFAIP3 interacting protein 3provided by VGNC
Primary source
VGNC:VGNC:47678
See related
Ensembl:ENSCAFG00845021891
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 19 NC_051823.1 (18983923..19087318)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 19 NC_006601.4 (19080344..19183678)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 19 NC_049240.1 (19693807..19796756)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 19 NC_049279.1 (18943691..19046633)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 19 NC_049760.1 (19214924..19317879)

Chromosome 19 - NC_051823.1Genomic Context describing neighboring genes Neighboring gene pyroglutamylated RFamide peptide receptor Neighboring gene uncharacterized LOC102156162 Neighboring gene uncharacterized LOC111091123 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106560046

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cellular response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNFAIP3-interacting protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051823.1 Reference ROS_Cfam_1.0

    Range
    18983923..19087318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038425857.1 → XP_038281785.1  TNFAIP3-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0STU6, A0A8I3PJ10, A0A8I3S2U8, A0A8P0N707
    Related
    ENSCAFP00845030449.1, ENSCAFT00845038879.1
    Conserved Domains (2) summary
    COG1196
    Location:136 → 368
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl15254
    Location:261 → 348
    UBAN; polyubiquitin binding domain of NEMO and related proteins

  2. XM_038425858.1 → XP_038281786.1  TNFAIP3-interacting protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0STU6, A0A8I3PJ10
    Conserved Domains (1) summary
    COG1196
    Location:124 → 325
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049279.1 Alternate UMICH_Zoey_3.1

    Range
    18943691..19046633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038502090.1 → XP_038358018.1  TNFAIP3-interacting protein 3 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:136 → 368
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl15254
    Location:261 → 348
    UBAN; polyubiquitin binding domain of NEMO and related proteins

  2. XM_038502091.1 → XP_038358019.1  TNFAIP3-interacting protein 3 isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:124 → 325
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049760.1 Alternate UNSW_CanFamBas_1.0

    Range
    19214924..19317879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038628880.1 → XP_038484808.1  TNFAIP3-interacting protein 3 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:136 → 368
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl15254
    Location:261 → 348
    UBAN; polyubiquitin binding domain of NEMO and related proteins

  2. XM_038628881.1 → XP_038484809.1  TNFAIP3-interacting protein 3 isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:124 → 325
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049240.1 Alternate UU_Cfam_GSD_1.0

    Range
    19693807..19796756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038564764.1 → XP_038420692.1  TNFAIP3-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0STU6, A0A8I3PJ10, A0A8I3S2U8, A0A8P0N707
    Conserved Domains (2) summary
    COG1196
    Location:136 → 368
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl15254
    Location:261 → 348
    UBAN; polyubiquitin binding domain of NEMO and related proteins

  2. XM_038564765.1 → XP_038420693.1  TNFAIP3-interacting protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0STU6, A0A8I3PJ10
    Conserved Domains (1) summary
    COG1196
    Location:124 → 325
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006601.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19080344..19183678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014121376.3 → XP_013976851.1  TNFAIP3-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0STU6, A0A8I3PJ10, A0A8I3S2U8, A0A8P0N707
    Conserved Domains (2) summary
    COG1196
    Location:136 → 368
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl15254
    Location:261 → 348
    UBAN; polyubiquitin binding domain of NEMO and related proteins

  2. XM_038454718.1 → XP_038310646.1  TNFAIP3-interacting protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0STU6, A0A8I3PJ10
    Conserved Domains (1) summary
    COG1196
    Location:124 → 325
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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