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SCN9A sodium voltage-gated channel alpha subunit 9 [ Canis lupus familiaris (dog) ]

Gene ID: 100855710, updated on 26-Sep-2018

Summary

Official Symbol
SCN9Aprovided by VGNC
Official Full Name
sodium voltage-gated channel alpha subunit 9provided by VGNC
Primary source
VGNC:VGNC:45924
See related
Ensembl:ENSCAFG00000011438
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: 36
Exon count:
27
Annotation release Status Assembly Chr Location
105 current CanFam3.1 (GCF_000002285.3) 36 NC_006618.3 (11287358..11382897, complement)

Chromosome 36 - NC_006618.3Genomic Context describing neighboring genes Neighboring gene protein CEBPZOS-like Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene uncharacterized LOC111094283 Neighboring gene uncharacterized LOC102153897 Neighboring gene sodium voltage-gated channel alpha subunit 7

Genomic regions, transcripts, and products

Genomic Sequence:
NC_006618.3 Chromosome 36 Reference CanFam3.1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General gene information

Homology

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CanFam3.1 Primary Assembly

Genomic

  1. NC_006618.3 Reference CanFam3.1 Primary Assembly

    Range
    11287358..11382897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022414842.1XP_022270550.1  sodium channel protein type 9 subunit alpha isoform X4

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11791454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487669
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17621825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_022414840.1XP_022270548.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11901465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487680
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17731836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_022414841.1XP_022270549.1  sodium channel protein type 9 subunit alpha isoform X3

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11791454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487669
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17621825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  4. XM_022414839.1XP_022270547.1  sodium channel protein type 9 subunit alpha isoform X1

    Related
    ENSCAFP00000016982.2, ENSCAFT00000018336.2
    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11901465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487680
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17731836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  5. XM_022414844.1XP_022270552.1  sodium channel protein type 9 subunit alpha isoform X6

    Related
    ENSCAFP00000043072.1, ENSCAFT00000046546.2
    Conserved Domains (5) summary
    cd13433
    Location:13461398
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:10791354
    Ion_trans; Ion transport protein
    pfam06512
    Location:8701075
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:376569
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:16621725
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  6. XM_022414843.1XP_022270551.1  sodium channel protein type 9 subunit alpha isoform X5

    Conserved Domains (5) summary
    cd13433
    Location:12091261
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:9421217
    Ion_trans; Ion transport protein
    pfam06512
    Location:733938
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:239432
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:15251588
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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