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LINC00506 long intergenic non-protein coding RNA 506 [ Homo sapiens (human) ]

Gene ID: 100846978, updated on 25-Jan-2022

Summary

Official Symbol
LINC00506provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 506provided by HGNC
Primary source
HGNC:HGNC:43557
See related
Ensembl:ENSG00000281392 AllianceGenome:HGNC:43557
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00506 in Genome Data Viewer
Location:
3p12.1-p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (87089280..87157069)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (87138430..87206219)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene vestigial like family member 3 Neighboring gene phosphoribosyl pyrophosphate amidotransferase pseudogene Neighboring gene phosphoribosyl pyrophosphate amidotransferase pseudogene 1 Neighboring gene microRNA 4795 Neighboring gene charged multivesicular body protein 2B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.
EBI GWAS Catalog
Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047469.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC107204, AC108709
    Related
    ENST00000629295.1
  2. NR_104153.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains two alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC108709, DA542035

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    87089280..87157069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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