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LOC100810577 ubiquitin carboxyl-terminal hydrolase 18 [ Glycine max (soybean) ]

Gene ID: 100810577, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100810577
Gene description
ubiquitin carboxyl-terminal hydrolase 18
Locus tag
GLYMA_04G058300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (4767200..4772906, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (4776360..4782067, complement)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene uncharacterized acetyltransferase At3g50280 Neighboring gene F-box only protein 13 Neighboring gene uncharacterized LOC102666861 Neighboring gene histidine kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4767200..4772906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003523615.5 → XP_003523663.1  ubiquitin carboxyl-terminal hydrolase 18

    See identical proteins and their annotated locations for XP_003523663.1

    UniProtKB/TrEMBL
    I1JU40
    Conserved Domains (2) summary
    cd02661
    Location:177 → 482
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam01753
    Location:60 → 97
    zf-MYND; MYND finger
Nucleotide Protein
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