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CYP60 peptidyl-prolyl cis-trans isomerase CYP60 [ Glycine max (soybean) ]

Gene ID: 100809682, updated on 7-Dec-2023

Summary

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Gene symbol
CYP60
Gene description
peptidyl-prolyl cis-trans isomerase CYP60
Locus tag
GLYMA_19G009700v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmCYP60
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Genomic context

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Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (902831..908039, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (907722..912930, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene sugar efflux transporter SWEET47 Neighboring gene sugar efflux transporter SWEET48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of Cyclophilin gene family in soybean (Glycine max). Mainali HR, et al. BMC Plant Biol, 2014 Oct 29. PMID 25348509, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase CYP60
Names
peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357226.1 → NP_001344155.1  peptidyl-prolyl cis-trans isomerase CYP60

    Status: VALIDATED

    Source sequence(s)
    ACUP04006597, AK285926
    UniProtKB/TrEMBL
    I1N5T2
    Conserved Domains (1) summary
    cd01924
    Location:258 → 432
    cyclophilin_TLP40_like; cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase ...

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    902831..908039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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