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LOC100798930 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [ Glycine max (soybean) ]

Gene ID: 100798930, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100798930
Gene description
probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
Locus tag
GLYMA_08G277000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (36496716..36501102)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (37077716..37081907)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog Neighboring gene uncharacterized LOC100792782 Neighboring gene probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic Neighboring gene uncharacterized LOC121175239

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The NAC family transcription factor GmNAC42-1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean. Jahan MA, et al. BMC Genomics, 2019 Feb 20. PMID 30786857, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    36496716..36501102
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003530543.5 → XP_003530591.1  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

    See identical proteins and their annotated locations for XP_003530591.1

    UniProtKB/TrEMBL
    I1KX60, I1KX62
    Conserved Domains (1) summary
    PLN02582
    Location:62 → 711
    PLN02582; 1-deoxy-D-xylulose-5-phosphate synthase
Nucleotide Protein
Heading Accession and Version

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