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HDA2 histone deacetylase [ Glycine max (soybean) ]

Gene ID: 100795375, updated on 25-Jan-2024

Summary

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Gene symbol
HDA2
Gene description
histone deacetylase
Locus tag
GLYMA_04G000200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmHDA2
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (21915..31115)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (21963..31115)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C05D11.9-like Neighboring gene monosaccharide-sensing protein 2 Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean. Yang C, et al. BMC Plant Biol, 2018 Oct 11. PMID 30305032, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    21915..31115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003543887.5 → XP_003543935.1  histone deacetylase 19

    See identical proteins and their annotated locations for XP_003543935.1

    UniProtKB/TrEMBL
    I1LWR2
    Conserved Domains (2) summary
    cl14364
    Location:391 → 423
    Gp67; Gene product 67
    cl17011
    Location:17 → 395
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_041014901.1 → XP_040870835.1  histone deacetylase 19

    UniProtKB/TrEMBL
    I1LWR2
    Conserved Domains (2) summary
    cl14364
    Location:391 → 423
    Gp67; Gene product 67
    cl17011
    Location:17 → 395
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  3. XM_006593626.4 → XP_006593689.1  histone deacetylase 19

    See identical proteins and their annotated locations for XP_006593689.1

    UniProtKB/TrEMBL
    I1LWR2
    Conserved Domains (2) summary
    cl14364
    Location:391 → 423
    Gp67; Gene product 67
    cl17011
    Location:17 → 395
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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