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Slc12a6 solute carrier family 12 member 6 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771685, updated on 8-Mar-2024

Summary

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Gene symbol
Slc12a6
Gene description
solute carrier family 12 member 6
See related
Ensembl:ENSCGRG00015007232
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Slc12a6 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613982.1 (189984..272446)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (65999382..66079951, complement)

NW_003613982.1Genomic Context describing neighboring genes Neighboring gene NUT midline carcinoma family member 1 Neighboring gene NOP10 ribonucleoprotein Neighboring gene ER membrane protein complex subunit 4 Neighboring gene 60S ribosomal protein L35a-like Neighboring gene katanin regulatory subunit B1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell volume homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 12 member 6
Names
solute carrier family 12 (potassium/chloride transporter), member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613982.1 Reference CriGri_1.0 Primary Assembly

    Range
    189984..272446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003503582.5 → XP_003503630.1  solute carrier family 12 member 6 isoform X1

    See identical proteins and their annotated locations for XP_003503630.1

    UniProtKB/TrEMBL
    A0A8C2N471, G3HIG7
    Conserved Domains (3) summary
    TIGR00930
    Location:109 → 1150
    2a30; K-Cl cotransporter
    pfam03522
    Location:774 → 1150
    SLC12; Solute carrier family 12
    cl00456
    Location:209 → 360
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_003503583.5 → XP_003503631.1  solute carrier family 12 member 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N471, A0A9J7GAT1
    Conserved Domains (3) summary
    TIGR00930
    Location:94 → 1135
    2a30; K-Cl cotransporter
    pfam03522
    Location:759 → 1135
    SLC12; Solute carrier family 12
    cl00456
    Location:194 → 345
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_003503584.5 → XP_003503632.1  solute carrier family 12 member 6 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MWH0, A0A8C2N471
    Conserved Domains (3) summary
    TIGR00930
    Location:58 → 1099
    2a30; K-Cl cotransporter
    pfam03522
    Location:723 → 1099
    SLC12; Solute carrier family 12
    cl00456
    Location:158 → 309
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    65999382..66079951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027422278.2 → XP_027278079.1  solute carrier family 12 member 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N471, A0A9J7GAT1
    Related
    ENSCGRP00015009544.1, ENSCGRT00015011753.2

  2. XM_027422277.2 → XP_027278078.1  solute carrier family 12 member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N471, G3HIG7

  3. XM_027422279.2 → XP_027278080.1  solute carrier family 12 member 6 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MWH0, A0A8C2N471
    Related
    ENSCGRP00015009625.1, ENSCGRT00015011844.2
Nucleotide Protein Strain
Heading Accession and Version

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