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Slc12a5 solute carrier family 12 member 5 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100768413, updated on 8-Mar-2024

Summary

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Gene symbol
Slc12a5
Gene description
solute carrier family 12 member 5
Locus tag
I79_006809
See related
Ensembl:ENSCGRG00015021052
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Slc12a5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
25
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613798.1 (1889566..1915409, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (14424380..14463696, complement)

NW_003613798.1Genomic Context describing neighboring genes Neighboring gene CD40 molecule Neighboring gene nuclear receptor coactivator 5 Neighboring gene extensin-like Neighboring gene matrix metallopeptidase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell volume homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 12 member 5
Names
solute carrier family 12 (potassium/chloride transporter), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613798.1 Reference CriGri_1.0 Primary Assembly

    Range
    1889566..1915409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035454625.1 → XP_035310516.1  solute carrier family 12 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LC52, A0A9J7GYI1
    Conserved Domains (1) summary
    TIGR00930
    Location:21 → 1111
    2a30; K-Cl cotransporter

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    14424380..14463696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027423422.2 → XP_027279223.1  solute carrier family 12 member 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C2L826, A0A8C2LDG9
    Related
    ENSCGRP00015027957.1, ENSCGRT00015034251.2

  2. XM_035446268.1 → XP_035302159.1  solute carrier family 12 member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LC52, A0A9J7GYI1
    Related
    ENSCGRP00015028025.2, ENSCGRT00015034334.2
    Conserved Domains (1) summary
    TIGR00930
    Location:21 → 1111
    2a30; K-Cl cotransporter

  3. XM_035446266.1 → XP_035302157.1  solute carrier family 12 member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LC52, A0A9J7GYI1
    Conserved Domains (1) summary
    TIGR00930
    Location:21 → 1111
    2a30; K-Cl cotransporter

  4. XM_035446267.1 → XP_035302158.1  solute carrier family 12 member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LC52, A0A9J7GYI1
    Conserved Domains (1) summary
    TIGR00930
    Location:21 → 1111
    2a30; K-Cl cotransporter

  5. XM_035446269.1 → XP_035302160.1  solute carrier family 12 member 5 isoform X4

    UniProtKB/TrEMBL
    A0A8C2LC52, A0A9J7H397
    Conserved Domains (1) summary
    TIGR00930
    Location:1 → 1060
    2a30; K-Cl cotransporter
Nucleotide Protein Strain
Heading Accession and Version

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