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Xdh xanthine dehydrogenase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766626, updated on 8-Mar-2024

Summary

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Gene symbol
Xdh
Gene description
xanthine dehydrogenase
See related
Ensembl:ENSCGRG00015020876
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Xdh in Genome Data Viewer
Location:
chromosome: 7
Exon count:
37
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614828.1 (287969..353203, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (9700062..9765272)

NW_003614828.1Genomic Context describing neighboring genes Neighboring gene EH domain containing 3 Neighboring gene 60S ribosomal protein L7a-like Neighboring gene steroid 5 alpha-reductase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molybdopterin cofactor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xanthine dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xanthine dehydrogenase/oxidase
Names
Xanthine dehydrogenase/oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614828.1 Reference CriGri_1.0 Primary Assembly

    Range
    287969..353203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003510086.4 → XP_003510134.1  xanthine dehydrogenase/oxidase isoform X1

    See identical proteins and their annotated locations for XP_003510134.1

    UniProtKB/TrEMBL
    A0A061HWK7, G3I4G1
    Conserved Domains (6) summary
    PLN02906
    Location:23 → 1318
    PLN02906; xanthine dehydrogenase
    pfam00941
    Location:231 → 411
    FAD_binding_5; FAD binding domain in molybdopterin dehydrogenase
    pfam01315
    Location:587 → 693
    Ald_Xan_dh_C; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
    pfam01799
    Location:87 → 157
    Fer2_2; [2Fe-2S] binding domain
    pfam02738
    Location:711 → 1236
    Ald_Xan_dh_C2; Molybdopterin-binding domain of aldehyde dehydrogenase
    pfam03450
    Location:418 → 522
    CO_deh_flav_C; CO dehydrogenase flavoprotein C-terminal domain

  2. XM_016979529.3 → XP_016835018.1  xanthine dehydrogenase/oxidase isoform X2

    UniProtKB/TrEMBL
    A0A061HWK7
    Conserved Domains (6) summary
    PLN02906
    Location:23 → 1318
    PLN02906; xanthine dehydrogenase
    pfam00941
    Location:231 → 411
    FAD_binding_5; FAD binding domain in molybdopterin dehydrogenase
    pfam01315
    Location:587 → 693
    Ald_Xan_dh_C; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
    pfam01799
    Location:87 → 157
    Fer2_2; [2Fe-2S] binding domain
    pfam02738
    Location:711 → 1236
    Ald_Xan_dh_C2; Molybdopterin-binding domain of aldehyde dehydrogenase
    pfam03450
    Location:418 → 522
    CO_deh_flav_C; CO dehydrogenase flavoprotein C-terminal domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    9700062..9765272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027426102.2 → XP_027281903.1  xanthine dehydrogenase/oxidase isoform X1

    UniProtKB/TrEMBL
    A0A061HWK7, G3I4G1
    Related
    ENSCGRP00015027622.1, ENSCGRT00015033832.2

  2. XM_027426101.2 → XP_027281902.1  xanthine dehydrogenase/oxidase isoform X3

    UniProtKB/TrEMBL
    A0A061HWK7, A0A9J7GBA7
    Related
    ENSCGRP00015057633.1, ENSCGRT00015066827.1
Nucleotide Protein Strain
Heading Accession and Version

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