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Otx2 orthodenticle homeobox 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766419, updated on 8-Mar-2024
Gene symbol
Otx2
Gene description
orthodenticle homeobox 2
See related
Ensembl:ENSCGRG00015029644
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
all
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Try the new Transcripts and proteins table
See Otx2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614222.1 (145639..149251)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (204710969..204714581, complement)

NW_003614222.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A3-like Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
homeobox protein OTX2
Names
Homeobox protein OTX2

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614222.1 Reference CriGri_1.0 Primary Assembly

    Range
    145639..149251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007646755.3 → XP_007644945.1  homeobox protein OTX2 isoform X1

    See identical proteins and their annotated locations for XP_007644945.1

    UniProtKB/TrEMBL
    A0A8C2M039
    Conserved Domains (2) summary
    pfam00046
    Location:50 → 102
    Homeobox; Homeobox domain
    pfam03529
    Location:163 → 242
    TF_Otx; Otx1 transcription factor

  2. XM_035458253.1 → XP_035314144.1  homeobox protein OTX2 isoform X2

    UniProtKB/TrEMBL
    G3HRU9
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:155 → 234
    TF_Otx; Otx1 transcription factor

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    204710969..204714581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035453310.1 → XP_035309201.1  homeobox protein OTX2 isoform X2

    UniProtKB/TrEMBL
    G3HRU9
    Related
    ENSCGRP00015046969.1, ENSCGRT00015061278.1
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:155 → 234
    TF_Otx; Otx1 transcription factor

  2. XM_027386469.2 → XP_027242270.1  homeobox protein OTX2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2M039
    Conserved Domains (2) summary
    pfam00046
    Location:50 → 102
    Homeobox; Homeobox domain
    pfam03529
    Location:163 → 242
    TF_Otx; Otx1 transcription factor
Nucleotide Protein Strain
Heading Accession and Version

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