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Setd2 SET domain containing 2, histone lysine methyltransferase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100765637, updated on 8-Mar-2024
Gene symbol
Setd2
Gene description
SET domain containing 2, histone lysine methyltransferase
See related
Ensembl:ENSCGRG00015017403
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
all
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Try the new Transcripts and proteins table
See Setd2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614047.1 (1116289..1191896)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (218024629..218115423)

NW_003614047.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 18 Neighboring gene U6 spliceosomal RNA Neighboring gene kinesin family member 9 Neighboring gene death domain-containing membrane protein NRADD Neighboring gene neurobeachin like 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
histone-lysine N-methyltransferase SETD2
Names
Histone-lysine N-methyltransferase SETD2

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614047.1 Reference CriGri_1.0 Primary Assembly

    Range
    1116289..1191896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016976570.3 → XP_016832059.1  histone-lysine N-methyltransferase SETD2 isoform X1

    UniProtKB/TrEMBL
    G3HKR8

  2. XM_016976571.3 → XP_016832060.1  histone-lysine N-methyltransferase SETD2 isoform X2

    UniProtKB/TrEMBL
    G3HKR8

  3. XM_027437877.2 → XP_027293678.1  histone-lysine N-methyltransferase SETD2 isoform X3

    UniProtKB/TrEMBL
    G3HKR8

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    218024629..218115423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027414684.2 → XP_027270485.1  histone-lysine N-methyltransferase SETD2 isoform X4

    UniProtKB/TrEMBL
    A0A9J7FX75, G3HKR8

  2. XM_027414685.2 → XP_027270486.1  histone-lysine N-methyltransferase SETD2 isoform X5

    UniProtKB/TrEMBL
    A0A8C2LIB1, G3HKR8
    Related
    ENSCGRP00015051716.1, ENSCGRT00015072692.1

  3. XM_027414686.2 → XP_027270487.1  histone-lysine N-methyltransferase SETD2 isoform X6

    UniProtKB/TrEMBL
    A0A9J7FXC2, G3HKR8
    Related
    ENSCGRP00015023007.2, ENSCGRT00015028218.2

  4. XM_027414688.2 → XP_027270489.1  histone-lysine N-methyltransferase SETD2 isoform X7

    UniProtKB/TrEMBL
    A0A9J7JHJ8, G3HKR8
    Related
    ENSCGRP00015022948.2, ENSCGRT00015028151.2

RNA

  1. XR_004769766.1 RNA Sequence

  2. XR_004769767.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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