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Slc5a6 solute carrier family 5 member 6 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100765026, updated on 8-Mar-2024

Summary

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Gene symbol
Slc5a6
Gene description
solute carrier family 5 member 6
Locus tag
I79_002573
See related
Ensembl:ENSCGRG00015026314
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Slc5a6 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613640.1 (2222996..2239800, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (13331551..13348456)

NW_003613640.1Genomic Context describing neighboring genes Neighboring gene proline rich 30 Neighboring gene transcription factor 23 Neighboring gene tudor and KH domain-containing protein-like Neighboring gene all-trans retinoic acid induced differentiation factor Neighboring gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase Neighboring gene solute carrier family 30 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sodium-dependent multivitamin transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biotin transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pantothenate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent multivitamin transporter
Names
Sodium-dependent multivitamin transporter
solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613640.1 Reference CriGri_1.0 Primary Assembly

    Range
    2222996..2239800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007655243.4 → XP_007653433.1  sodium-dependent multivitamin transporter isoform X1

    See identical proteins and their annotated locations for XP_007653433.1

    UniProtKB/TrEMBL
    A0A8C2LUD4
    Conserved Domains (1) summary
    cl00456
    Location:24 → 550
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_007655240.3 → XP_007653430.1  sodium-dependent multivitamin transporter isoform X1

    See identical proteins and their annotated locations for XP_007653430.1

    UniProtKB/TrEMBL
    A0A8C2LUD4
    Conserved Domains (1) summary
    cl00456
    Location:24 → 550
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_016964128.3 → XP_016819617.1  sodium-dependent multivitamin transporter isoform X2

    UniProtKB/TrEMBL
    A0A9J7GAB1
    Conserved Domains (1) summary
    cl00456
    Location:24 → 503
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_007655237.3 → XP_007653427.1  sodium-dependent multivitamin transporter isoform X1

    See identical proteins and their annotated locations for XP_007653427.1

    UniProtKB/TrEMBL
    A0A8C2LUD4
    Conserved Domains (1) summary
    cl00456
    Location:24 → 550
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    13331551..13348456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027424488.2 → XP_027280289.1  sodium-dependent multivitamin transporter isoform X1

    UniProtKB/TrEMBL
    A0A8C2LUD4
    Related
    ENSCGRP00015035013.1, ENSCGRT00015042671.2

  2. XM_027424486.2 → XP_027280287.1  sodium-dependent multivitamin transporter isoform X1

    UniProtKB/TrEMBL
    A0A8C2LUD4

  3. XM_027424487.2 → XP_027280288.1  sodium-dependent multivitamin transporter isoform X1

    UniProtKB/TrEMBL
    A0A8C2LUD4

  4. XM_027424485.2 → XP_027280286.1  sodium-dependent multivitamin transporter isoform X1

    UniProtKB/TrEMBL
    A0A8C2LUD4

  5. XM_027424490.2 → XP_027280291.1  sodium-dependent multivitamin transporter isoform X2

    UniProtKB/TrEMBL
    A0A9J7GAB1
    Related
    ENSCGRP00015043387.1, ENSCGRT00015062766.1
Nucleotide Protein Strain
Heading Accession and Version

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