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Des desmin [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100764990, updated on 8-Mar-2024

Summary

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Gene symbol
Des
Gene description
desmin
Locus tag
I79_018932
See related
Ensembl:ENSCGRG00015004863
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614917.1 (78654..85900)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (428507538..428514605)

NW_003614917.1Genomic Context describing neighboring genes Neighboring gene regulated endocrine specific protein 18 Neighboring gene aspartyl aminopeptidase Neighboring gene striated muscle enriched protein kinase Neighboring gene GDP-mannose pyrophosphorylase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in skeletal muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
desmin
Names
desmin-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614917.1 Reference CriGri_1.0 Primary Assembly

    Range
    78654..85900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003510595.5 → XP_003510643.1  desmin isoform X1

    See identical proteins and their annotated locations for XP_003510643.1

    UniProtKB/TrEMBL
    A0A8C2MU06, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 415
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  2. XM_035461296.1 → XP_035317187.1  desmin isoform X3

    UniProtKB/TrEMBL
    A0A9J7K4C6, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 408
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  3. XM_035461297.1 → XP_035317188.1  desmin isoform X4

    UniProtKB/TrEMBL
    A0A9J7GR11, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 392
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  4. XM_035461299.1 → XP_035317190.1  desmin isoform X6

    UniProtKB/TrEMBL
    A0A9J7GNI4
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 245
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  5. XM_035461295.1 → XP_035317186.1  desmin isoform X2

    UniProtKB/TrEMBL
    A0A9J7GSE5, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 414
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  6. XM_035461298.1 → XP_035317189.1  desmin isoform X5

    UniProtKB/TrEMBL
    A0A9J7GQT3
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 325
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    428507538..428514605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027397296.2 → XP_027253097.1  desmin isoform X1

    UniProtKB/TrEMBL
    A0A8C2MU06, G3I621
    Related
    ENSCGRP00015006301.1, ENSCGRT00015007769.2

  2. XM_035439246.1 → XP_035295137.1  desmin isoform X3

    UniProtKB/TrEMBL
    A0A9J7K4C6, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 408
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  3. XM_035439247.1 → XP_035295138.1  desmin isoform X4

    UniProtKB/TrEMBL
    A0A9J7GR11, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 392
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  4. XM_035439249.1 → XP_035295140.1  desmin isoform X6

    UniProtKB/TrEMBL
    A0A9J7GNI4
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 245
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  5. XM_035439245.1 → XP_035295136.1  desmin isoform X2

    UniProtKB/TrEMBL
    A0A9J7GSE5, G3I621
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 414
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region

  6. XM_035439248.1 → XP_035295139.1  desmin isoform X5

    UniProtKB/TrEMBL
    A0A9J7GQT3
    Conserved Domains (2) summary
    pfam00038
    Location:107 → 325
    Filament; Intermediate filament protein
    pfam04732
    Location:9 → 106
    Filament_head; Intermediate filament head (DNA binding) region
Nucleotide Protein Strain
Heading Accession and Version

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