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Rita1 RBPJ interacting and tubulin associated 1 [ Mus musculus (house mouse) ]

Gene ID: 100764, updated on 19-Mar-2019

Summary

Official Symbol
Rita1provided by MGI
Official Full Name
RBPJ interacting and tubulin associated 1provided by MGI
Primary source
MGI:MGI:1922021
See related
Ensembl:ENSMUSG00000029600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rita; C86297; AI853657; 1110008J03Rik
Expression
Ubiquitous expression in colon adult (RPKM 13.5), stomach adult (RPKM 12.7) and 28 other tissues See more
Orthologs

Genomic context

See Rita1 in Genome Data Viewer
Location:
5; 5 F
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (120609058..120612589, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (121059072..121062578, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene IQ motif containing D Neighboring gene predicted gene, 38700 Neighboring gene predicted gene, 38465 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 Neighboring gene cilia and flagella associated protein 73 Neighboring gene RAS protein activator like 1 (GAP1 like)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tubulin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 
negative regulation of Notch signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of Notch signaling pathway ISO
Inferred from Sequence Orthology
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
nuclear export IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear export ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
centrosome ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
RBPJ-interacting and tubulin-associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029096.3NP_083372.1  RBPJ-interacting and tubulin-associated protein 1

    See identical proteins and their annotated locations for NP_083372.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC125183, AI850520, AK003581
    Consensus CDS
    CCDS51635.1
    UniProtKB/Swiss-Prot
    Q9D1H0
    Related
    ENSMUSP00000031599.2, ENSMUST00000031599.8
    Conserved Domains (1) summary
    pfam17066
    Location:1253
    RITA; RBPJ-interacting and tubulin associated protein
  2. NM_133908.1NP_598669.1  RBPJ-interacting and tubulin-associated protein 1

    See identical proteins and their annotated locations for NP_598669.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC125183, CX239969
    Consensus CDS
    CCDS51635.1
    UniProtKB/Swiss-Prot
    Q9D1H0
    Related
    ENSMUSP00000136946.1, ENSMUST00000177800.7
    Conserved Domains (1) summary
    pfam17066
    Location:1253
    RITA; RBPJ-interacting and tubulin associated protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    120609058..120612589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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