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Irf9 interferon regulatory factor 9 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100760392, updated on 8-Mar-2024

Summary

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Gene symbol
Irf9
Gene description
interferon regulatory factor 9
See related
Ensembl:ENSCGRG00015018107
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Irf9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613875.1 (1110609..1116628, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (210811263..210817101)

NW_003613875.1Genomic Context describing neighboring genes Neighboring gene importin 4 Neighboring gene REC8 meiotic recombination protein Neighboring gene ring finger protein 31 Neighboring gene proteasome activator subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613875.1 Reference CriGri_1.0 Primary Assembly

    Range
    1110609..1116628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003502061.5 → XP_003502109.1  interferon regulatory factor 9 isoform X3

    See identical proteins and their annotated locations for XP_003502109.1

    UniProtKB/TrEMBL
    A0A8C2N123, G3HDE1
    Conserved Domains (2) summary
    pfam00605
    Location:11 → 115
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:211 → 374
    IRF-3; Interferon-regulatory factor 3

  2. XM_007642676.4 → XP_007640866.1  interferon regulatory factor 9 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N123, A0A9J7F2S9
    Conserved Domains (2) summary
    pfam00605
    Location:44 → 148
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:244 → 407
    IRF-3; Interferon-regulatory factor 3

  3. XM_007642678.4 → XP_007640868.1  interferon regulatory factor 9 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N123, A0A9J7F0N0
    Conserved Domains (2) summary
    pfam00605
    Location:31 → 135
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:231 → 394
    IRF-3; Interferon-regulatory factor 3

  4. XM_027436346.2 → XP_027292147.1  interferon regulatory factor 9 isoform X3

    UniProtKB/TrEMBL
    A0A8C2N123, G3HDE1

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    210811263..210817101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027390566.2 → XP_027246367.1  interferon regulatory factor 9 isoform X3

    UniProtKB/TrEMBL
    A0A8C2N123, G3HDE1

  2. XM_027390564.2 → XP_027246365.1  interferon regulatory factor 9 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N123, A0A9J7F2S9
    Related
    ENSCGRP00015023794.2, ENSCGRT00015029181.2

  3. XM_027390565.2 → XP_027246366.1  interferon regulatory factor 9 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N123, A0A9J7F0N0

  4. XM_027390567.2 → XP_027246368.1  interferon regulatory factor 9 isoform X3

    UniProtKB/TrEMBL
    A0A8C2N123, G3HDE1
Nucleotide Protein Strain
Heading Accession and Version

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