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Aff1 ALF transcription elongation factor 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100751914, updated on 8-Mar-2024

Summary

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Gene symbol
Aff1
Gene description
ALF transcription elongation factor 1
Locus tag
I79_023655
See related
Ensembl:ENSCGRG00015012921
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Aff1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003616598.1 (54282..97085, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (165559941..165727407)

NW_003616598.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003616598.1 Reference CriGri_1.0 Primary Assembly

    Range
    54282..97085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035437832.1 → XP_035293723.1  AF4/FMR2 family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MCC7
    Conserved Domains (3) summary
    PHA03247
    Location:371 → 654
    PHA03247; large tegument protein UL36; Provisional
    pfam05110
    Location:1 → 453
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:903 → 1162
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    165559941..165727407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035453413.1 → XP_035309304.1  AF4/FMR2 family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MCC7, A0A9J7EVS3
    Related
    ENSCGRP00015016797.1, ENSCGRT00015020598.2
    Conserved Domains (3) summary
    PHA03247
    Location:444 → 727
    PHA03247; large tegument protein UL36; Provisional
    pfam05110
    Location:21 → 526
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:976 → 1235
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  2. XM_027388495.2 → XP_027244296.1  AF4/FMR2 family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MCC7, A0A9J7EVS3
    Conserved Domains (3) summary
    PHA03247
    Location:444 → 727
    PHA03247; large tegument protein UL36; Provisional
    pfam05110
    Location:21 → 526
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:976 → 1235
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  3. XM_027388496.2 → XP_027244297.1  AF4/FMR2 family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MCC7, A0A9J7F0V5
    Related
    ENSCGRP00015016828.2, ENSCGRT00015020634.2

  4. XM_035453414.1 → XP_035309305.1  AF4/FMR2 family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MCC7, A0A9J7HEK5
    Conserved Domains (3) summary
    PHA03247
    Location:372 → 655
    PHA03247; large tegument protein UL36; Provisional
    pfam05110
    Location:1 → 454
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:904 → 1163
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  5. XM_027388497.2 → XP_027244298.1  AF4/FMR2 family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2MCA7, A0A8C2MCC7
    Related
    ENSCGRP00015016893.2, ENSCGRT00015020716.2
Nucleotide Protein Strain
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