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Slc12a4 solute carrier family 12 member 4 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100751159, updated on 8-Mar-2024

Summary

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Gene symbol
Slc12a4
Gene description
solute carrier family 12 member 4
Locus tag
I79_011346
See related
Ensembl:ENSCGRG00015008269
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Slc12a4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614050.1 (1084214..1100601)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (182232063..182253854, complement)

NW_003614050.1Genomic Context describing neighboring genes Neighboring gene dipeptidase 2 Neighboring gene dipeptidase 3 Neighboring gene lecithin-cholesterol acyltransferase Neighboring gene proteasome 20S subunit beta 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell volume homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 12 member 4
Names
solute carrier family 12 (potassium/chloride transporter), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614050.1 Reference CriGri_1.0 Primary Assembly

    Range
    1084214..1100601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035457065.1 → XP_035312956.1  solute carrier family 12 member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2M5L5
    Conserved Domains (1) summary
    TIGR00930
    Location:42 → 1085
    2a30; K-Cl cotransporter

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    182232063..182253854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035442648.1 → XP_035298539.1  solute carrier family 12 member 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C2M5L5
    Related
    ENSCGRP00015010898.1, ENSCGRT00015013358.2
    Conserved Domains (1) summary
    TIGR00930
    Location:42 → 1085
    2a30; K-Cl cotransporter
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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