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LOC100747239 protein apterous-like [ Bombus impatiens (common eastern bumble bee) ]

Gene ID: 100747239, updated on 1-Oct-2024

Summary

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Gene symbol
LOC100747239
Gene description
protein apterous-like
See related
EnsemblRapid:ENSBIMG00000010831
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus impatiens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
honey bee all
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Genomic context

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See LOC100747239 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_176561.1 (3135230..3193208)

NT_176561.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100744480 Neighboring gene HEAT repeat containing 1 homolog l(2)k09022 Neighboring gene uncharacterized LOC100744843 Neighboring gene MIP18 family protein galla-2 Neighboring gene OXA1L mitochondrial inner membrane protein Neighboring gene uncharacterized LOC112212276 Neighboring gene LIM/homeobox protein Lhx9-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_176561 Unplaced Scaffold Reference BIMP_2.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein apterous-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIMP_2.2

Genomic

  1. NT_176561.1 Reference BIMP_2.2

    Range
    3135230..3193208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024365590.2 → XP_024221358.1  protein apterous-like isoform X1

    UniProtKB/TrEMBL
    A0A6P6F7S7
    Related
    ENSBIMP00000015525.1, ENSBIMT00000026694.1
    Conserved Domains (3) summary
    cd09369
    Location:188 → 241
    LIM1_Lhx2_Lhx9; The first LIM domain of Lhx2 and Lhx9 family
    cd09377
    Location:247 → 305
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    pfam00046
    Location:451 → 503
    Homeobox; Homeobox domain

  2. XM_024365592.2 → XP_024221360.1  protein apterous-like isoform X2

    UniProtKB/TrEMBL
    A0A6P6F8U8
    Conserved Domains (3) summary
    cd09369
    Location:187 → 240
    LIM1_Lhx2_Lhx9; The first LIM domain of Lhx2 and Lhx9 family
    cd09377
    Location:246 → 304
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    pfam00046
    Location:450 → 502
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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