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LOC100743542 cell death specification protein 2 [ Bombus impatiens (common eastern bumble bee) ]

Gene ID: 100743542, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100743542
Gene description
cell death specification protein 2
See related
EnsemblRapid:ENSBIMG00000011580
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus impatiens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
fruit fly honey bee all
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Genomic context

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See LOC100743542 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_176570.1 (654808..658795, complement)

NT_176570.1Genomic Context describing neighboring genes Neighboring gene UPF0687 protein C20orf27 homolog Neighboring gene uncharacterized LOC100743179 Neighboring gene RING finger protein 141 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC105680395 Neighboring gene WD repeat-containing protein 60 Neighboring gene Transferrin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_176570 Unplaced Scaffold Reference BIMP_2.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell death specification protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIMP_2.2

Genomic

  1. NT_176570.1 Reference BIMP_2.2

    Range
    654808..658795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012382449.3 → XP_012237872.1  cell death specification protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012237872.1

    UniProtKB/TrEMBL
    A0A6P3UNK7
    Related
    ENSBIMP00000016774.1, ENSBIMT00000028229.1
    Conserved Domains (1) summary
    cd14695
    Location:144 → 202
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  2. XM_003487381.4 → XP_003487429.1  cell death specification protein 2 isoform X1

    See identical proteins and their annotated locations for XP_003487429.1

    UniProtKB/TrEMBL
    A0A6P3UNK7
    Related
    ENSBIMP00000016773.1, ENSBIMT00000028228.1
    Conserved Domains (1) summary
    cd14695
    Location:144 → 202
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  3. XM_012382453.2 → XP_012237876.1  cell death specification protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P3UNL7
    Related
    ENSBIMP00000016777.1, ENSBIMT00000028227.1
    Conserved Domains (1) summary
    cd14695
    Location:116 → 174
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  4. XM_012382450.2 → XP_012237873.1  cell death specification protein 2 isoform X2

    See identical proteins and their annotated locations for XP_012237873.1

    UniProtKB/TrEMBL
    A0A6P3UP86
    Conserved Domains (1) summary
    cd14695
    Location:118 → 176
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  5. XM_012382451.3 → XP_012237874.1  cell death specification protein 2 isoform X2

    See identical proteins and their annotated locations for XP_012237874.1

    UniProtKB/TrEMBL
    A0A6P3UP86
    Conserved Domains (1) summary
    cd14695
    Location:118 → 176
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
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