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Map1lc3b microtubule associated protein 1 light chain 3 beta [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100726328, updated on 8-Mar-2024
Gene symbol
Map1lc3b
Gene description
microtubule associated protein 1 light chain 3 beta
See related
Ensembl:ENSCPOG00000036350
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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See Map1lc3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947487.1 (118160775..118168513, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_175985.1 (107285..114934)

NW_026947487.1Genomic Context describing neighboring genes Neighboring gene basic proline-rich protein-like Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene uncharacterized LOC134475822 Neighboring gene transfer RNA methionine (anticodon CAU)

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
microtubule-associated proteins 1A/1B light chain 3B

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947487.1 Reference mCavPor4.1

    Range
    118160775..118168513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003460789.5 → XP_003460837.1  microtubule-associated proteins 1A/1B light chain 3B

    UniProtKB/TrEMBL
    A0A286XE45
    Related
    ENSCPOP00000023725.1
    Conserved Domains (1) summary
    cd01611
    Location:7 → 120
    GABARAP; Ubiquitin domain of GABA-receptor-associated protein
Nucleotide Protein
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