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acod1 aconitate decarboxylase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100711765, updated on 8-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSONIG00000032122
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
5
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG16 NC_031987.2 (22696341..22701356, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG16 NC_031987.1 (17047282..17051485)

Linkage Group LG16 - NC_031987.2Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 3a Neighboring gene CLN5 intracellular trafficking protein Neighboring gene uncharacterized LOC100698877 Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene LIM domain 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031987.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    22696341..22701356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003451576.5 → XP_003451624.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A669BVS6
    Related
    ENSONIP00000039834.1, ENSONIT00000090751.1
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 446
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials