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tbxta T-box transcription factor Ta [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100710660, updated on 19-Jun-2025
Gene symbol
tbxta
Gene description
T-box transcription factor Ta
See related
Ensembl:ENSONIG00000007611
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
all
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See tbxta in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
8
Annotation release Status Assembly LG Location
RS_2025_06 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG22 NC_031985.2 (32977150..32980491)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG22 NC_031985.1 (1661205..1664490, complement)

Linkage Group LG22 - NC_031985.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100698397 Neighboring gene AT-rich interactive domain 1Ab Neighboring gene uncharacterized LOC112843484 Neighboring gene nudC nuclear distribution protein Neighboring gene keratinocyte differentiation factor 1b

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mesoderm formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in somitogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
T-box transcription factor T-A
Names
brachyury protein homolog A

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RefSeqs of Annotated Genomes: GCF_001858045.2-RS_2025_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031985.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    32977150..32980491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003443752.5 → XP_003443800.4  T-box transcription factor T-A

    UniProtKB/TrEMBL
    A0A669D233, I3JL49
    Related
    ENSONIP00000009593.1, ENSONIT00000009599.2
Nucleotide Protein
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