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ascl1b achaete-scute family bHLH transcription factor 1b [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100706722, updated on 19-Jun-2025
Gene symbol
ascl1b
Gene description
achaete-scute family bHLH transcription factor 1b
See related
Ensembl:ENSONIG00000020440
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
all
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See ascl1b in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
1
Annotation release Status Assembly LG Location
RS_2025_06 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (58801799..58804215, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (59300867..59302514)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 44 Neighboring gene uncharacterized LOC112847414 Neighboring gene low density lipoprotein receptor class A domain containing 3 Neighboring gene interferon regulatory factor 7 Neighboring gene PHD and ring finger domains 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
achaete-scute homolog 1b

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RefSeqs of Annotated Genomes: GCF_001858045.2-RS_2025_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    58801799..58804215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005470996.4 → XP_005471053.1  achaete-scute homolog 1b

    See identical proteins and their annotated locations for XP_005471053.1

    UniProtKB/TrEMBL
    I3KX99
    Related
    ENSONIP00000025745.1, ENSONIT00000025766.2
    Conserved Domains (1) summary
    cl00081
    Location:83 → 153
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases