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macrod1 mono-ADP ribosylhydrolase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703609, updated on 12-Sep-2024

Summary

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Gene symbol
macrod1
Gene description
mono-ADP ribosylhydrolase 1
See related
Ensembl:ENSONIG00000005326
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
zebrafish all
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Genomic context

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See macrod1 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
11
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG2 NC_031966.2 (20728945..20875811)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG2 NC_031966.1 (18812178..18958994)

Linkage Group LG2 - NC_031966.2Genomic Context describing neighboring genes Neighboring gene FERM domain containing kindlin 3b Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene fibronectin leucine rich transmembrane protein 1b Neighboring gene uncharacterized LOC109204438 Neighboring gene coiled-coil domain containing 88B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP-ribosylglutamate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-glutamate ADP-deribosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in purine nucleoside metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-acetyl-ADP-ribose deacetylase MACROD1
Names
MACRO domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031966.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    20728945..20875811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005467529.4 → XP_005467586.1  O-acetyl-ADP-ribose deacetylase MACROD1 isoform X2

    UniProtKB/TrEMBL
    A0A669F4Z0, I3JCV9
    Related
    ENSONIP00000080615.1, ENSONIT00000044672.1
    Conserved Domains (2) summary
    COG2110
    Location:191 → 355
    YmdB; O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis]
    cd02908
    Location:190 → 356
    Macro_Appr_pase_like; Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose ...

  2. XM_005467528.4 → XP_005467585.1  O-acetyl-ADP-ribose deacetylase MACROD1 isoform X1

    UniProtKB/TrEMBL
    A0A669CJI8, I3JCV9
    Related
    ENSONIP00000047510.1, ENSONIT00000090432.1
    Conserved Domains (2) summary
    COG2110
    Location:191 → 355
    YmdB; O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis]
    cd02908
    Location:190 → 356
    Macro_Appr_pase_like; Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose ...
Nucleotide Protein
Heading Accession and Version

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