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tcf25 transcription factor 25 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703422, updated on 12-Sep-2018

Summary

Gene symbol
tcf25
Gene description
transcription factor 25
See related
Ensembl:ENSONIG00000005649
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in testis (RPKM 17.5), ovary (RPKM 13.0) and 9 other tissues See more
Orthologs

Genomic context

See tcf25 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
19
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG1 NC_031965.2 (23069654..23088558)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG1 NC_031965.1 (21654185..21673522)

Linkage Group LG1 - NC_031965.2Genomic Context describing neighboring genes Neighboring gene cytochrome b-245 light chain Neighboring gene mevalonate diphosphate decarboxylase Neighboring gene melanocortin 1 receptor Neighboring gene differentially expressed in FDCP 8 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031965.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    23069654..23088558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005467117.4XP_005467174.1  transcription factor 25 isoform X2

    Conserved Domains (1) summary
    pfam04910
    Location:253593
    Tcf25; Transcriptional repressor TCF25
  2. XM_003442327.5XP_003442375.1  transcription factor 25 isoform X1

    Related
    ENSONIP00000007112
    Conserved Domains (1) summary
    pfam04910
    Location:253593
    Tcf25; Transcriptional repressor TCF25
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