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clasp2 cytoplasmic linker associated protein 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100699286, updated on 13-Oct-2018

Summary

Gene symbol
clasp2
Gene description
cytoplasmic linker associated protein 2
See related
Ensembl:ENSONIG00000002323
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in brain (RPKM 50.5), eye (RPKM 25.9) and 8 other tissues See more
Orthologs

Genomic context

See clasp2 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
50
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG22 NC_031985.2 (22184577..22245269)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG22 NC_031985.1 (16507037..16567817, complement)

Linkage Group LG22 - NC_031985.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106098141 Neighboring gene F-box and leucine rich repeat protein 2 Neighboring gene upstream binding protein 1 Neighboring gene programmed cell death 6 interacting protein Neighboring gene uncharacterized LOC112843442

Genomic regions, transcripts, and products

Expression

  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031985.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    22184577..22245269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005478584.4XP_005478641.1  CLIP-associating protein 2 isoform X2

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  2. XM_005478583.4XP_005478640.1  CLIP-associating protein 2 isoform X1

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  3. XM_005478589.4XP_005478646.1  CLIP-associating protein 2 isoform X7

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  4. XM_005478595.4XP_005478652.1  CLIP-associating protein 2 isoform X13

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  5. XM_019350502.2XP_019206047.1  CLIP-associating protein 2 isoform X17

  6. XM_019350503.2XP_019206048.1  CLIP-associating protein 2 isoform X18

  7. XM_005478591.4XP_005478648.1  CLIP-associating protein 2 isoform X9

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  8. XM_025902088.1XP_025757873.1  CLIP-associating protein 2 isoform X20

    Conserved Domains (5) summary
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
    pfam02985
    Location:169199
    HEAT; HEAT repeat
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    cl26312
    Location:12771505
    Cnd3; Nuclear condensing complex subunits, C-term domain
    cl28033
    Location:564789
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
  9. XM_005478588.4XP_005478645.1  CLIP-associating protein 2 isoform X6

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  10. XM_005478594.4XP_005478651.1  CLIP-associating protein 2 isoform X12

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  11. XM_005478586.4XP_005478643.1  CLIP-associating protein 2 isoform X5

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  12. XM_019350506.2XP_019206051.1  CLIP-associating protein 2 isoform X24

  13. XM_025902089.1XP_025757874.1  CLIP-associating protein 2 isoform X26

    Conserved Domains (5) summary
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
    pfam02985
    Location:169199
    HEAT; HEAT repeat
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    cl26312
    Location:12481476
    Cnd3; Nuclear condensing complex subunits, C-term domain
    cl28033
    Location:564770
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
  14. XM_025902090.1XP_025757875.1  CLIP-associating protein 2 isoform X31

    Conserved Domains (5) summary
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
    pfam02985
    Location:169199
    HEAT; HEAT repeat
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    cl26312
    Location:12321460
    Cnd3; Nuclear condensing complex subunits, C-term domain
    cl28033
    Location:564752
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
  15. XM_005478585.4XP_005478642.1  CLIP-associating protein 2 isoform X3

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  16. XM_005478587.4XP_005478644.1  CLIP-associating protein 2 isoform X4

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  17. XM_005478593.4XP_005478650.1  CLIP-associating protein 2 isoform X11

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  18. XM_005478600.4XP_005478657.1  CLIP-associating protein 2 isoform X27

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  19. XM_019350508.1XP_019206053.1  CLIP-associating protein 2 isoform X30

  20. XM_005478592.4XP_005478649.1  CLIP-associating protein 2 isoform X10

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  21. XM_005478590.4XP_005478647.1  CLIP-associating protein 2 isoform X8

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  22. XM_013270655.3XP_013126109.1  CLIP-associating protein 2 isoform X21

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  23. XM_005478596.4XP_005478653.1  CLIP-associating protein 2 isoform X16

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  24. XM_019350500.2XP_019206045.1  CLIP-associating protein 2 isoform X14

  25. XM_019350501.2XP_019206046.1  CLIP-associating protein 2 isoform X15

  26. XM_005478597.4XP_005478654.1  CLIP-associating protein 2 isoform X22

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  27. XM_005478598.4XP_005478655.1  CLIP-associating protein 2 isoform X23

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  28. XM_005478599.3XP_005478656.1  CLIP-associating protein 2 isoform X25

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  29. XM_005478601.3XP_005478658.1  CLIP-associating protein 2 isoform X28

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  30. XM_013270656.3XP_013126110.1  CLIP-associating protein 2 isoform X32

    Conserved Domains (2) summary
    pfam12348
    Location:334535
    CLASP_N; CLASP N terminal
    sd00044
    Location:94118
    HEAT; HEAT repeat [structural motif]
  31. XM_019350504.2XP_019206049.1  CLIP-associating protein 2 isoform X19

  32. XM_019350507.2XP_019206052.1  CLIP-associating protein 2 isoform X29

  33. XM_005478604.4XP_005478661.1  CLIP-associating protein 2 isoform X35

    See identical proteins and their annotated locations for XP_005478661.1

    Conserved Domains (2) summary
    pfam12348
    Location:102303
    CLASP_N; CLASP N terminal
    sd00044
    Location:11371165
    HEAT; HEAT repeat [structural motif]
  34. XM_005478605.4XP_005478662.1  CLIP-associating protein 2 isoform X35

    See identical proteins and their annotated locations for XP_005478662.1

    Conserved Domains (2) summary
    pfam12348
    Location:102303
    CLASP_N; CLASP N terminal
    sd00044
    Location:11371165
    HEAT; HEAT repeat [structural motif]
  35. XM_005478603.4XP_005478660.1  CLIP-associating protein 2 isoform X34

    Conserved Domains (2) summary
    pfam12348
    Location:103304
    CLASP_N; CLASP N terminal
    sd00044
    Location:11381166
    HEAT; HEAT repeat [structural motif]
  36. XM_005478602.4XP_005478659.1  CLIP-associating protein 2 isoform X33

    Conserved Domains (2) summary
    pfam12348
    Location:106307
    CLASP_N; CLASP N terminal
    sd00044
    Location:11411169
    HEAT; HEAT repeat [structural motif]
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