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LOC100695726 estrogen-related receptor gamma [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100695726, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100695726
Gene description
estrogen-related receptor gamma
See related
Ensembl:ENSONIG00000000573
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC100695726 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
10
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG15 NC_031980.2 (7308292..7341338, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG15 NC_031980.1 (32109144..32131303)

Linkage Group LG15 - NC_031980.2Genomic Context describing neighboring genes Neighboring gene fasciculation and elongation protein zeta 2b Neighboring gene usherin Neighboring gene G patch domain containing 2 Neighboring gene lipin 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen-related receptor gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031980.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    7308292..7341338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025899165.1 → XP_025754950.1  estrogen-related receptor gamma isoform X4

    UniProtKB/TrEMBL
    I3IVT7
    Conserved Domains (2) summary
    cd06946
    Location:221 → 440
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:99 → 195
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  2. XM_003440788.5 → XP_003440836.2  estrogen-related receptor gamma isoform X2

    UniProtKB/TrEMBL
    I3IVT7
    Conserved Domains (2) summary
    cd06946
    Location:242 → 461
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:120 → 216
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  3. XM_005449602.4 → XP_005449659.1  estrogen-related receptor gamma isoform X3

    UniProtKB/TrEMBL
    I3IVT7
    Conserved Domains (2) summary
    cd06946
    Location:241 → 460
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:122 → 218
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  4. XM_005449601.4 → XP_005449658.1  estrogen-related receptor gamma isoform X1

    UniProtKB/TrEMBL
    I3IVT7, I3IVT8
    Related
    ENSONIP00000000728.2, ENSONIT00000000727.2
    Conserved Domains (2) summary
    cd06946
    Location:244 → 463
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:122 → 218
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  5. XM_019346227.2 → XP_019201772.1  estrogen-related receptor gamma isoform X4

    UniProtKB/TrEMBL
    I3IVT7
    Related
    ENSONIP00000000727.2, ENSONIT00000000726.2
    Conserved Domains (2) summary
    cd06946
    Location:221 → 440
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:99 → 195
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
Nucleotide Protein
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