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cdk5rap2 CDK5 regulatory subunit associated protein 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100693979, updated on 13-Oct-2018

Summary

Gene symbol
cdk5rap2
Gene description
CDK5 regulatory subunit associated protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 14.4), eye (RPKM 7.8) and 9 other tissues See more
Orthologs

Genomic context

See cdk5rap2 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
52
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (16392704..16424969, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (16491698..16524056, complement)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene dolichol kinase Neighboring gene nucleoporin 188 Neighboring gene collagen alpha-1(XXVII) chain A Neighboring gene putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842 Neighboring gene uncharacterized LOC112847349

Genomic regions, transcripts, and products

Expression

  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
CDK5 regulatory subunit-associated protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    16392704..16424969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025909220.1XP_025765005.1  CDK5 regulatory subunit-associated protein 2 isoform X3

    Conserved Domains (3) summary
    pfam07989
    Location:53121
    Cnn_1N; Centrosomin N-terminal motif 1
    cl19219
    Location:97178
    DUF342; Protein of unknown function (DUF342)
    cl25732
    Location:210937
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_025909219.1XP_025765004.1  CDK5 regulatory subunit-associated protein 2 isoform X2

    Conserved Domains (3) summary
    pfam07989
    Location:53121
    Cnn_1N; Centrosomin N-terminal motif 1
    cl19219
    Location:97178
    DUF342; Protein of unknown function (DUF342)
    cl25732
    Location:210937
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_025909221.1XP_025765006.1  CDK5 regulatory subunit-associated protein 2 isoform X5

    Conserved Domains (3) summary
    pfam07989
    Location:53121
    Cnn_1N; Centrosomin N-terminal motif 1
    cl19219
    Location:97178
    DUF342; Protein of unknown function (DUF342)
    cl25732
    Location:210937
    SMC_N; RecF/RecN/SMC N terminal domain
  4. XM_005456197.4XP_005456254.1  CDK5 regulatory subunit-associated protein 2 isoform X1

    Conserved Domains (5) summary
    COG0419
    Location:48645
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1322
    Location:424845
    RmuC; DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair]
    pfam04740
    Location:439643
    LXG; LXG domain of WXG superfamily
    pfam07989
    Location:53121
    Cnn_1N; Centrosomin N-terminal motif 1
    pfam15035
    Location:24652547
    Rootletin; Ciliary rootlet component, centrosome cohesion
  5. XM_019360979.2XP_019216524.1  CDK5 regulatory subunit-associated protein 2 isoform X4

  6. XM_025909222.1XP_025765007.1  CDK5 regulatory subunit-associated protein 2 isoform X6

    Conserved Domains (3) summary
    pfam07989
    Location:53121
    Cnn_1N; Centrosomin N-terminal motif 1
    cl19219
    Location:97178
    DUF342; Protein of unknown function (DUF342)
    cl25732
    Location:210937
    SMC_N; RecF/RecN/SMC N terminal domain
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