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taf10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100693070, updated on 8-Mar-2024

Summary

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Gene symbol
taf10
Gene description
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor
See related
Ensembl:ENSONIG00000002055
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See taf10 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
5
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (24228973..24232783, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (20762866..20766684)

Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 16 Neighboring gene Y box binding protein 1 Neighboring gene G protein-coupled receptor 160 Neighboring gene peptidylprolyl isomerase H (cyclophilin H) Neighboring gene uncharacterized LOC100692795 Neighboring gene uncharacterized LOC102077748

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables promoter-specific chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 10
Names
TATA-box binding protein associated factor 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    24228973..24232783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003444780.4 → XP_003444828.1  transcription initiation factor TFIID subunit 10

    UniProtKB/TrEMBL
    I3J126
    Related
    ENSONIP00000002566.1, ENSONIT00000002567.2
    Conserved Domains (1) summary
    cd07982
    Location:83 → 185
    TAF10; The TATA Binding Protein (TBP) Associated Factor 10
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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