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LOC100691581 hydroperoxide isomerase ALOXE3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691581, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100691581
Gene description
hydroperoxide isomerase ALOXE3
See related
Ensembl:ENSONIG00000009414
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC100691581 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
16
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG23 NC_031986.2 (27679982..27699027, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG3b NC_031968.1 (47737024..47756063)

Linkage Group LG23 - NC_031986.2Genomic Context describing neighboring genes Neighboring gene arachidonate 15-lipoxygenase-like Neighboring gene uncharacterized LOC112843961 Neighboring gene uncharacterized LOC109201586 Neighboring gene arachidonate 12-lipoxygenase, 12R-type-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroperoxide isomerase ALOXE3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031986.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    27679982..27699027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025903450.1 → XP_025759235.1  hydroperoxide isomerase ALOXE3 isoform X1

    UniProtKB/TrEMBL
    A0A669AXA2
    Conserved Domains (2) summary
    cl00011
    Location:4 → 114
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl27717
    Location:256 → 688
    Lipoxygenase

  2. XM_025903449.1 → XP_025759234.1  hydroperoxide isomerase ALOXE3 isoform X1

    UniProtKB/TrEMBL
    A0A669AXA2
    Related
    ENSONIP00000028041.1, ENSONIT00000045328.1
    Conserved Domains (2) summary
    cl00011
    Location:4 → 114
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl27717
    Location:256 → 688
    Lipoxygenase

  3. XM_005462935.4 → XP_005462992.1  hydroperoxide isomerase ALOXE3 isoform X2

    See identical proteins and their annotated locations for XP_005462992.1

    UniProtKB/TrEMBL
    I3JSI7
    Related
    ENSONIP00000011832.1, ENSONIT00000011841.2
    Conserved Domains (2) summary
    pfam00305
    Location:224 → 658
    Lipoxygenase
    cl00011
    Location:4 → 114
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

  4. XM_025903451.1 → XP_025759236.1  hydroperoxide isomerase ALOXE3 isoform X3

    Conserved Domains (2) summary
    cl00011
    Location:2 → 49
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl27717
    Location:191 → 623
    Lipoxygenase
Nucleotide Protein
Heading Accession and Version

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