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nrl neural retina leucine zipper [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100690715, updated on 8-Mar-2024

Summary

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Gene symbol
nrl
Gene description
neural retina leucine zipper
See related
Ensembl:ENSONIG00000002907
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
zebrafish all
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Genomic context

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See nrl in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
5
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG23 NC_031986.2 (37862489..37869061, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG23 NC_031986.1 (7806444..7812955)

Linkage Group LG23 - NC_031986.2Genomic Context describing neighboring genes Neighboring gene phosphoribosyl pyrophosphate amidotransferase Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase Neighboring gene GTP-binding protein REM 2 Neighboring gene uncharacterized LOC102082634 Neighboring gene capping protein, Arp2/3 and myosin-I linker protein 3 Neighboring gene uncharacterized LOC102082779

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MafA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031986.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    37862489..37869061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003439755.5 → XP_003439803.1  transcription factor MafA

    UniProtKB/TrEMBL
    I3J451
    Related
    ENSONIP00000003641.1, ENSONIT00000003642.2
    Conserved Domains (3) summary
    cd14718
    Location:331 → 399
    bZIP_Maf_large; coiled coil [structural motif]
    pfam03131
    Location:309 → 399
    bZIP_Maf; bZIP Maf transcription factor
    pfam08383
    Location:139 → 197
    Maf_N; Maf N-terminal region
Nucleotide Protein
Heading Accession and Version

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