LOC100688777 Bardet-Biedl syndrome 10 [Canis lupus familiaris (dog)] - Gene

Summary

Gene symbol: LOC100688777
Gene description: Bardet-Biedl syndrome 10
See related: RGD:12055364
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: BBS10
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Genomic context

Location:: chromosome: 15

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	15	NC_051819.1 (19646036..19657550, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	15	NC_006597.4 (19788066..19819690, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	15	NC_049236.1 (19432535..19444024, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	15	NC_049275.1 (19243010..19274520, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	15	NC_049756.1 (19304566..19316044, complement)

Chromosome 15 - NC_051819.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General protein information

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Preferred Names: Bardet-Biedl syndrome 10 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051819.1 Reference ROS_Cfam_1.0

Range

19646036..19657550 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

RNA

XR_005438140.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

NC_049275.1 Alternate UMICH_Zoey_3.1

Range

19243010..19274520 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038496110.1 → XP_038352038.1

Conserved Domains (2) summary

cl02777
Location:581 → 696

chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...

pfam00118
Location:17 → 425

Cpn60_TCP1; TCP-1/cpn60 chaperonin family

RNA

XR_005336600.1 RNA Sequence
XR_005336599.1 RNA Sequence
XR_005336598.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049756.1 Alternate UNSW_CanFamBas_1.0

Range

19304566..19316044 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

RNA

XR_005404591.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049236.1 Alternate UU_Cfam_GSD_1.0

Range

19432535..19444024 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

RNA

XR_005370365.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

19788066..19819690 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003431978.5 → XP_003432026.4 Bardet-Biedl syndrome 10 protein homolog

UniProtKB/TrEMBL

A0A8C0KS41

Conserved Domains (2) summary

cl02777
Location:581 → 696

chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...

pfam00118
Location:17 → 425

Cpn60_TCP1; TCP-1/cpn60 chaperonin family