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RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [ Canis lupus familiaris (dog) ]

Gene ID: 100688117, updated on 27-Jun-2026
Official Symbol
RRP9provided by VGNC
Official Full Name
ribosomal RNA processing 9, U3 small nucleolar RNA binding proteinprovided by VGNC
Primary source
VGNC:VGNC:45767
See related
Ensembl:ENSCAFG00845018277 RGD:12316400
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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Try the new Transcripts and proteins table
See RRP9 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (38125083..38133349)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (37755970..37764232)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (38182533..38190801)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (37488685..37496949)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (37897438..37905679)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 4 Neighboring gene G protein-coupled receptor 62 Neighboring gene poly(ADP-ribose) polymerase family member 3 Neighboring gene U6 spliceosomal RNA Neighboring gene IQ motif containing F1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
U3 small nucleolar RNA-interacting protein 2
Names
ribosomal RNA processing 9, small subunit (SSU) processome component, homolog

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    38125083..38133349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038427603.1 → XP_038283531.1  U3 small nucleolar RNA-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C0LCF1, A0A8I3S362, A0A8I3S381
    Related
    ENSCAFP00845025392.1, ENSCAFT00845032476.1
    Conserved Domains (2) summary
    cd00200
    Location:139 → 439
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:149 → 197
    7WD40; WD40 repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    37488685..37496949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038503306.1 → XP_038359234.1  

    Conserved Domains (2) summary
    cd00200
    Location:139 → 439
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:149 → 197
    7WD40; WD40 repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    37897438..37905679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038630447.1 → XP_038486375.1  

    Conserved Domains (2) summary
    cd00200
    Location:139 → 439
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:149 → 197
    7WD40; WD40 repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    38182533..38190801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038566289.1 → XP_038422217.1  U3 small nucleolar RNA-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C0LCF1, A0A8I3S362, A0A8I3S381
    Conserved Domains (2) summary
    cd00200
    Location:139 → 439
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:149 → 197
    7WD40; WD40 repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    37755970..37764232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003432819.6 → XP_003432867.3  U3 small nucleolar RNA-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C0LCF1, A0A8I3S362, A0A8I3S381
    Conserved Domains (2) summary
    cd00200
    Location:139 → 439
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:149 → 197
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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