U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCAF4 SR-related CTD associated factor 4 [ Canis lupus familiaris (dog) ]

Gene ID: 100687160, updated on 25-Jul-2026
Official Symbol
SCAF4provided by VGNC
Official Full Name
SR-related CTD associated factor 4provided by VGNC
Primary source
VGNC:VGNC:53039
See related
Ensembl:ENSCAFG00845023056 RGD:12134159
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See SCAF4 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
21
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 31 NC_051835.1 (26665041..26723881, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 31 NC_006613.4 (26538227..26597009, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 31 NC_049252.1 (27129000..27187809, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 31 NC_049291.1 (26610942..26669751, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 31 NC_049772.1 (26622773..26681555, complement)

Chromosome 31 - NC_051835.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119867106 Neighboring gene U6 spliceosomal RNA Neighboring gene superoxide dismutase 1 Neighboring gene uncharacterized LOC102155229 Neighboring gene uncharacterized LOC111093456 Neighboring gene uncharacterized LOC111093455

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II C-terminal domain phosphoserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
SR-related and CTD-associated factor 4

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051835.1 Reference ROS_Cfam_1.0

    Range
    26665041..26723881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443341.1 → XP_038299269.1  SR-related and CTD-associated factor 4 isoform X3

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:949 → 1018
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  2. XM_038443338.1 → XP_038299266.1  SR-related and CTD-associated factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Related
    ENSCAFP00845032122.1, ENSCAFT00845041001.1
    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:971 → 1040
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  3. XM_038443340.1 → XP_038299268.1  SR-related and CTD-associated factor 4 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Related
    ENSCAFP00845031878.1, ENSCAFT00845040724.1
    Conserved Domains (5) summary
    PRK03427
    Location:327 → 406
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:116 → 272
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:963 → 1032
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:2 → 127
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:491 → 571
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049291.1 Alternate UMICH_Zoey_3.1

    Range
    26610942..26669751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517759.1 → XP_038373687.1  

    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:949 → 1018
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  2. XM_038517757.1 → XP_038373685.1  

    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:971 → 1040
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  3. XM_038517758.1 → XP_038373686.1  

    Conserved Domains (5) summary
    PRK03427
    Location:327 → 406
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:116 → 272
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:963 → 1032
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:2 → 127
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:491 → 571
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049772.1 Alternate UNSW_CanFamBas_1.0

    Range
    26622773..26681555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645717.1 → XP_038501645.1  

    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:949 → 1018
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  2. XM_038645715.1 → XP_038501643.1  

    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:971 → 1040
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  3. XM_038645716.1 → XP_038501644.1  

    Conserved Domains (5) summary
    PRK03427
    Location:327 → 406
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:116 → 272
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:963 → 1032
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:2 → 127
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:491 → 571
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049252.1 Alternate UU_Cfam_GSD_1.0

    Range
    27129000..27187809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038581335.1 → XP_038437263.1  SR-related and CTD-associated factor 4 isoform X3

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:949 → 1018
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  2. XM_038581333.1 → XP_038437261.1  SR-related and CTD-associated factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:971 → 1040
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  3. XM_038581334.1 → XP_038437262.1  SR-related and CTD-associated factor 4 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:327 → 406
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:116 → 272
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:963 → 1032
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:2 → 127
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:491 → 571
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006613.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    26538227..26597009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038461748.1 → XP_038317676.1  SR-related and CTD-associated factor 4 isoform X3

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:949 → 1018
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  2. XM_038461746.1 → XP_038317674.1  SR-related and CTD-associated factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:335 → 414
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:124 → 280
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:971 → 1040
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:5 → 135
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:499 → 579
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins

  3. XM_038461747.1 → XP_038317675.1  SR-related and CTD-associated factor 4 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PHW4
    Conserved Domains (5) summary
    PRK03427
    Location:327 → 406
    PRK03427; cell division protein ZipA; Provisional
    PRK07994
    Location:116 → 272
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:963 → 1032
    PRK12678; transcription termination factor Rho; Provisional
    cd17005
    Location:2 → 127
    CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    cd12461
    Location:491 → 571
    RRM_SCAF4; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials