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AMOTL1 angiomotin like 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100674452, updated on 3-Feb-2018

Summary

Gene symbol
AMOTL1
Gene description
angiomotin like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs

Genomic context

See AMOTL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573455.1 (4968951..5122392)

NW_003573455.1Genomic Context describing neighboring genes Neighboring gene piwi like RNA-mediated gene silencing 4 Neighboring gene single-stranded DNA-binding protein, mitochondrial pseudogene Neighboring gene CWC15 spliceosome associated protein homolog Neighboring gene lysine demethylase 4D

Genomic regions, transcripts, and products

Genomic Sequence:
NW_003573455 Unplaced Scaffold Reference Loxafr3.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Tight junction, organism-specific biosystem (from KEGG)
    Tight junction, organism-specific biosystemTight junctions (TJs) are essential for establishing a selectively permeable barrier to diffusion through the paracellular space between neighboring cells. TJs are composed of at least three types of...
  • Tight junction, conserved biosystem (from KEGG)
    Tight junction, conserved biosystemTight junctions (TJs) are essential for establishing a selectively permeable barrier to diffusion through the paracellular space between neighboring cells. TJs are composed of at least three types of...

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Loxodonta africana Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Loxafr3.0 Primary Assembly

Genomic

  1. NW_003573455.1 Reference Loxafr3.0 Primary Assembly

    Range
    4968951..5122392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023554729.1XP_023410497.1  angiomotin-like protein 1 isoform X3

    Conserved Domains (2) summary
    pfam12240
    Location:518734
    Angiomotin_C; Angiomotin C terminal
    cl25732
    Location:351611
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_023554730.1XP_023410498.1  angiomotin-like protein 1 isoform X3

    Conserved Domains (2) summary
    pfam12240
    Location:518734
    Angiomotin_C; Angiomotin C terminal
    cl25732
    Location:351611
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_023554728.1XP_023410496.1  angiomotin-like protein 1 isoform X3

    Conserved Domains (2) summary
    pfam12240
    Location:518734
    Angiomotin_C; Angiomotin C terminal
    cl25732
    Location:351611
    SMC_N; RecF/RecN/SMC N terminal domain
  4. XM_023554727.1XP_023410495.1  angiomotin-like protein 1 isoform X1

    Conserved Domains (2) summary
    pfam12240
    Location:604820
    Angiomotin_C; Angiomotin C terminal
    cl25732
    Location:437697
    SMC_N; RecF/RecN/SMC N terminal domain
  5. XM_010595397.2XP_010593699.1  angiomotin-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam12240
    Location:604806
    Angiomotin_C; Angiomotin C terminal
    cl02488
    Location:444628
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
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