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SCN9A sodium voltage-gated channel alpha subunit 9 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100672494, updated on 17-Jan-2018

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573423.1 (61042106..61146534)

NW_003573423.1Genomic Context describing neighboring genes Neighboring gene xin actin binding repeat containing 2 Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene uncharacterized LOC104847427 Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene tetratricopeptide repeat domain 21B

Genomic regions, transcripts, and products

Genomic Sequence:
NW_003573423 Unplaced Scaffold Reference Loxafr3.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Loxodonta africana Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Loxafr3.0 Primary Assembly

Genomic

  1. NW_003573423.1 Reference Loxafr3.0 Primary Assembly

    Range
    61042106..61146534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010602854.2XP_010601156.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14581510
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12091466
    Ion_trans; Ion transport protein
    pfam06512
    Location:9821187
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488607
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17821837
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_003405814.3XP_003405862.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:14471499
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11981455
    Ion_trans; Ion transport protein
    pfam06512
    Location:9711176
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488607
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17711826
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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