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TMCO5B transmembrane and coiled-coil domains 5B (pseudogene) [ Homo sapiens (human) ]

Gene ID: 100652857, updated on 17-Jun-2024

Summary

Official Symbol
TMCO5Bprovided by HGNC
Official Full Name
transmembrane and coiled-coil domains 5B (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:34243
See related
AllianceGenome:HGNC:34243
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 11.4) See more
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Genomic context

See TMCO5B in Genome Data Viewer
Location:
15q13.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (33236476..33247555, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (31032972..31044045, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (33528677..33539756, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene formin 1 Neighboring gene uncharacterized LOC124903459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:33359268-33360091 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:33437521-33438720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9167 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6269 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:33486894-33487233 Neighboring gene uncharacterized LOC105370759 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9169 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:33530426-33530595 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:33603389-33603900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:33603901-33604410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6271 Neighboring gene NANOG hESC enhancer GRCh37_chr15:33620309-33620820 Neighboring gene RYR3 divergent transcript Neighboring gene ryanodine receptor 3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:33837506-33838705 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:33851407-33852197 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:33904937-33905438 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:33924098-33924317 Neighboring gene complement C1q binding protein pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • transmembrane and coiled-coil domain-containing protein 5B

Clone Names

  • FLJ25664

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046005.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC055874

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    33236476..33247555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    31032972..31044045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)