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LINC01023 long intergenic non-protein coding RNA 1023 [ Homo sapiens (human) ]

Gene ID: 100652853, updated on 10-Dec-2024

Summary

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Official Symbol
LINC01023provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1023provided by HGNC
Primary source
HGNC:HGNC:49004
See related
AllianceGenome:HGNC:49004
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HP07349
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Genomic context

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See LINC01023 in Genome Data Viewer
Location:
5q21.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (108727825..108728261, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (109230442..109230878, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (108063526..108063962, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:107953591-107954236 Neighboring gene ribosomal protein S20 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 1653 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:108007873-108008872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:108017096-108017596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108020945-108021578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108021579-108022211 Neighboring gene MPRA-validated peak5405 silencer Neighboring gene uncharacterized LOC107986440 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108063205-108063786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16221 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16223 Neighboring gene FER tyrosine kinase Neighboring gene RACK1 pseudogene 1 Neighboring gene MPRA-validated peak5407 silencer Neighboring gene LSM2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis. Bhandari R, et al. Mol Cell Biochem, 2023 Aug. PMID 36576714
  2. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. Oshikawa M, et al. Invest Ophthalmol Vis Sci, 2011 Aug 22. PMID 21697133
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis.
    Title: LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • CTC-329H14.4

Clone Names

  • FLJ44485

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BF972671

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    108727825..108728261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    109230442..109230878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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