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PRICKLE2-AS1 PRICKLE2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100652759, updated on 29-Mar-2018

Summary

Official Symbol
PRICKLE2-AS1provided by HGNC
Official Full Name
PRICKLE2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40916
See related
Ensembl:ENSG00000241111
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in endometrium (RPKM 12.5), brain (RPKM 8.4) and 22 other tissues See more

Genomic context

See PRICKLE2-AS1 in Genome Data Viewer
Location:
3p14.1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (64067964..64103131)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (64053640..64088807)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377121 Neighboring gene uncharacterized LOC107986093 Neighboring gene proteasome 26S subunit, non-ATPase 6 Neighboring gene long intergenic non-protein coding RNA 994 Neighboring gene PRICKLE2 antisense RNA 2 Neighboring gene prickle planar cell polarity protein 2 Neighboring gene peroxiredoxin 3 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.
NHGRI GWA Catalog

General gene information

Markers

Other Names

  • PRICKLE2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045697.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092040, AL832189
    Related
    ENST00000482609.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p12 Primary Assembly

    Range
    64067964..64103131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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