U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100631733 mothers against decapentaplegic homolog 3-like [ Amphimedon queenslandica ]

Gene ID: 100631733, updated on 10-Oct-2024
Gene symbol
LOC100631733
Gene description
mothers against decapentaplegic homolog 3-like
See related
EnsemblRapid:LOC100631733
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
Try the new Gene page
Try the new Transcripts and proteins table
See LOC100631733 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546273.1 (406141..409766, complement)

NW_003546273.1Genomic Context describing neighboring genes Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene nucleotide exchange factor SIL1-like Neighboring gene translin-like Neighboring gene major facilitator superfamily domain-containing protein 9-like Neighboring gene lariat debranching enzyme-like Neighboring gene ras-related C3 botulinum toxin substrate 1-like

Genomic Sequence:
NW_003546273.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables I-SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of heteromeric SMAD protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
mothers against decapentaplegic homolog 3-like
Names
mothers against decapentaplegic homolog 3 pseudogene

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546273.1 Reference v1.0 Primary Assembly

    Range
    406141..409766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019993639.1 → XP_019849198.1  mothers against decapentaplegic homolog 3-like isoform X2

    UniProtKB/TrEMBL
    A0AAN0IXM0
    Related
    XP_019849198.1, XM_019993639.1
    Conserved Domains (3) summary
    cd10495
    Location:268 → 448
    MH2_R-SMAD; C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs
    cl00055
    Location:39 → 162
    MH1; N-terminal Mad Homology 1 (MH1) domain
    cl26730
    Location:155 → 259
    Amelin; Ameloblastin precursor (Amelin)

  2. XM_019993638.1 → XP_019849197.1  mothers against decapentaplegic homolog 3-like isoform X1

    UniProtKB/TrEMBL
    A0A1X7VEC6
    Related
    XP_019849197.1, XM_019993638.1
    Conserved Domains (3) summary
    cd10488
    Location:39 → 163
    MH1_R-SMAD; N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs
    cd10495
    Location:269 → 449
    MH2_R-SMAD; C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs
    cl26730
    Location:156 → 260
    Amelin; Ameloblastin precursor (Amelin)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases