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Mir4843 microRNA mir-4843 [ Saccoglossus kowalevskii ]

Gene ID: 100628547, updated on 5-Feb-2022

Summary

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Gene symbol
Mir4843
Gene description
microRNA mir-4843
See related
EnsemblRapid:GeneID_100628547 miRBase:MI0017590
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Saccoglossus kowalevskii
Lineage
Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
Also known as
sko-mir-4843
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003106602.1 (353783..353873)

NW_003106602.1Genomic Context describing neighboring genes Neighboring gene multiple coagulation factor deficiency protein 2 homolog Neighboring gene bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66-like Neighboring gene uncharacterized LOC100375256 Neighboring gene microRNA mir-4832 Neighboring gene uncharacterized LOC100374056

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003106602 unplaced scaffold reference Skow_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. microRNA complements in deuterostomes: origin and evolution of microRNAs. Campo-Paysaa F, et al. Evol Dev, 2011 Jan-Feb. PMID 21210939
  2. miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381832, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • microRNA 4843

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038809.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    ACQM01012804
    Related
    NR_038809.1

RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Skow_1.1 Primary Assembly

Genomic

  1. NW_003106602.1 Reference Skow_1.1 Primary Assembly

    Range
    353783..353873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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