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SLFN11 schlafen family member 11 [ Sus scrofa (pig) ]

Gene ID: 100625890, updated on 1-Mar-2025
Gene symbol
SLFN11
Gene description
schlafen family member 11
See related
Ensembl:ENSSSCG00000032652 RGD:13929227
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 6.7), lung (RPKM 3.6) and 7 other tissues See more
Orthologs
human all
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See SLFN11 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (39974519..39996257)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (41461436..41503336)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit beta 1 Neighboring gene peroxisomal biogenesis factor 12 Neighboring gene schlafen family member 14 Neighboring gene unc-45 myosin chaperone B Neighboring gene notchless homolog 1

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Related articles in PubMed

  1. Structural and biochemical characterization of Schlafen11 N-terminal domain. Hou P, et al. Nucleic Acids Res, 2023 Jul 21. PMID 37293979, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Structural and biochemical characterization of Schlafen11 N-terminal domain.
    Title: Structural and biochemical characterization of Schlafen11 N-terminal domain.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
schlafen family member 11

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    39974519..39996257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021067412.1 → XP_020923071.1  schlafen family member 11 isoform X2

    UniProtKB/TrEMBL
    A0A8D0U4N7, A0A8D1G3C6
    Conserved Domains (2) summary
    cl26594
    Location:591 → 754
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl27772
    Location:22 → 345
    B3R; Poxviridae B3 protein

  2. XM_021067411.1 → XP_020923070.1  schlafen family member 11 isoform X1

    UniProtKB/TrEMBL
    A0A5G2RKN9, A0A8D0U4N7, A0A8D1G3C6
    Related
    ENSSSCP00000072717.1, ENSSSCT00000066576.1
    Conserved Domains (2) summary
    cl26594
    Location:591 → 755
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl27772
    Location:22 → 345
    B3R; Poxviridae B3 protein
Nucleotide Protein
Heading Accession and Version

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