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OBSL1 obscurin like cytoskeletal adaptor 1 [ Sus scrofa (pig) ]

Gene ID: 100624019, updated on 1-Mar-2025
Official Symbol
OBSL1provided by VGNC
Official Full Name
obscurin like cytoskeletal adaptor 1provided by VGNC
Primary source
VGNC:VGNC:96195
See related
Ensembl:ENSSSCG00000028052 RGD:14222047
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 48.1), heart (RPKM 17.1) and 7 other tissues See more
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See OBSL1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
22
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (121560009..121581314, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (134512265..134533024)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene chondroitin polymerizing factor Neighboring gene transmembrane protein 198 Neighboring gene inhibin subunit alpha Neighboring gene UBX domain-containing protein 2B-like

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
obscurin-like protein 1
Names
obscurin like 1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    121560009..121581314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021076303.1 → XP_020931962.1  obscurin-like protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8D0QUM6, A0A8D1PDP4
    Conserved Domains (6) summary
    smart00409
    Location:134 → 226
    IG; Immunoglobulin
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  2. XM_021076299.1 → XP_020931958.1  obscurin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D0QTP2, A0A8D1PM60
    Conserved Domains (7) summary
    smart00409
    Location:1815 → 1893
    IG; Immunoglobulin
    smart00410
    Location:134 → 226
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  3. XM_021076298.1 → XP_020931957.1  obscurin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0QTP2, A0A8D1PM60
    Conserved Domains (7) summary
    smart00409
    Location:1815 → 1893
    IG; Immunoglobulin
    smart00410
    Location:134 → 226
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  4. XM_021076302.1 → XP_020931961.1  obscurin-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0YP48, A0A8D1PM60
    Conserved Domains (7) summary
    smart00409
    Location:134 → 226
    IG; Immunoglobulin
    smart00410
    Location:1724 → 1802
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:825 → 893
    Ig; Immunoglobulin domain
    cl11960
    Location:1089 → 1176
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  5. XM_021076300.1 → XP_020931959.1  obscurin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D0QUI9, A0A8D1PM50, A0A8D1YDN6
    Conserved Domains (7) summary
    smart00409
    Location:1841 → 1919
    IG; Immunoglobulin
    smart00410
    Location:134 → 226
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1206 → 1293
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  6. XM_021076304.1 → XP_020931963.1  obscurin-like protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A287B285, A0A4X1UE68, A0A8D0QUM6, A0A8D1PDP4
    Related
    ENSSSCP00000050547.1, ENSSSCT00000058924.3
    Conserved Domains (7) summary
    smart00409
    Location:134 → 226
    IG; Immunoglobulin
    smart00410
    Location:1723 → 1801
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  7. XM_005672244.3 → XP_005672301.2  obscurin-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A287B8F0, A0A4X1U8Q3, A0A8D0QTP2, A0A8D1PM60
    Related
    ENSSSCP00000052588.1, ENSSSCT00000056125.3
    Conserved Domains (7) summary
    smart00409
    Location:1815 → 1893
    IG; Immunoglobulin
    smart00410
    Location:134 → 226
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  8. XM_021076305.1 → XP_020931964.1  obscurin-like protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D0QUM6, A0A8D1PDP4
    Conserved Domains (7) summary
    smart00409
    Location:134 → 226
    IG; Immunoglobulin
    smart00410
    Location:1723 → 1801
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  9. XM_021076306.1 → XP_020931965.1  obscurin-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A480MVE2
    Conserved Domains (7) summary
    smart00409
    Location:134 → 226
    IG; Immunoglobulin
    smart00410
    Location:435 → 510
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl11960
    Location:1180 → 1267
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

  10. XM_021076307.1 → XP_020931966.1  obscurin-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A480HT76, A0A8D0QTF9
    Related
    ENSSSCP00000066055.1, ENSSSCT00000067285.2
    Conserved Domains (6) summary
    smart00409
    Location:435 → 510
    IG; Immunoglobulin
    smart00410
    Location:134 → 226
    IG_like; Immunoglobulin like
    cd00063
    Location:518 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:12 → 88
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:916 → 984
    Ig; Immunoglobulin domain
    cl28434
    Location:257 → 336
    I-set; Immunoglobulin I-set domain

RNA

  1. XR_002339453.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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