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SLC15A4 solute carrier family 15 member 4 [ Sus scrofa (pig) ]

Gene ID: 100623262, updated on 8-Mar-2024

Summary

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Official Symbol
SLC15A4provided by VGNC
Official Full Name
solute carrier family 15 member 4provided by VGNC
Primary source
VGNC:VGNC:92937
See related
Ensembl:ENSSSCG00000025820
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
PHT1; PTR4
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 21.0), liver (RPKM 12.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SLC15A4 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (26122362..26154414)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (27770845..27803186)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 1 pseudogene Neighboring gene transmembrane protein 132D Neighboring gene glycosyltransferase 1 domain containing 1 Neighboring gene transmembrane protein 132C Neighboring gene uncharacterized LOC106505914

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-histidine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in histidine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligopeptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 15 member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001315736.1 → NP_001302665.1  solute carrier family 15 member 4

    Status: PROVISIONAL

    Source sequence(s)
    KF800734
    UniProtKB/TrEMBL
    A0A480YD76, A0A8D1RFT4, A0A8D1ZMG7, I3LDX0, W6D6F4
    Conserved Domains (2) summary
    pfam00854
    Location:157 → 484
    PTR2; POT family
    cl21472
    Location:29 → 240
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    26122362..26154414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003359076.4 → XP_003359124.4  solute carrier family 15 member 4 isoform X1

    UniProtKB/TrEMBL
    A0A480YD76, A0A8D1RFT4, A0A8D1ZMG7, I3LDX0, W6D6F4
    Related
    ENSSSCP00000022255.2, ENSSSCT00000031300.4
    Conserved Domains (2) summary
    pfam00854
    Location:157 → 484
    PTR2; POT family
    cl21472
    Location:29 → 240
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein Strain
Heading Accession and Version

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