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FANCA FA complementation group A [ Sus scrofa (pig) ]

Gene ID: 100621453, updated on 1-Mar-2025
Official Symbol
FANCAprovided by VGNC
Official Full Name
FA complementation group Aprovided by VGNC
Primary source
VGNC:VGNC:88001
See related
Ensembl:ENSSSCG00000024687 RGD:14118842
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 5.0), ovary (RPKM 4.0) and 8 other tissues See more
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See FANCA in Genome Data Viewer
Location:
chromosome: 6
Exon count:
42
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (253207..300159)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (378761..425687)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene transcription factor 25 Neighboring gene spire type actin nucleation factor 2 Neighboring gene uncharacterized LOC106509348 Neighboring gene zinc finger protein 276 Neighboring gene VPS9 domain containing 1 Neighboring gene spermatogenesis associated 2 like

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of regulatory T cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Fanconi anaemia nuclear complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
Fanconi anemia group A protein
Names
Fanconi anemia complementation group A

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    253207..300159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096998.1 → XP_020952657.1  Fanconi anemia group A protein isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDQ0
    Conserved Domains (2) summary
    pfam03511
    Location:1314 → 1359
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:191 → 540
    Fanconi_A_N; Fanconi anaemia group A protein N terminus

  2. XM_013994301.2 → XP_013849755.2  Fanconi anemia group A protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1TDQ0
    Conserved Domains (2) summary
    pfam03511
    Location:1287 → 1332
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:191 → 540
    Fanconi_A_N; Fanconi anaemia group A protein N terminus

  3. XM_005653229.3 → XP_005653286.2  Fanconi anemia group A protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1TDQ0, I3LKC7
    Related
    ENSSSCP00000024541.4, ENSSSCT00000031647.4
    Conserved Domains (2) summary
    pfam03511
    Location:1286 → 1331
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:191 → 540
    Fanconi_A_N; Fanconi anaemia group A protein N terminus

  4. XM_021096999.1 → XP_020952658.1  Fanconi anemia group A protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1TDQ0
    Conserved Domains (2) summary
    pfam03511
    Location:1313 → 1358
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:190 → 539
    Fanconi_A_N; Fanconi anaemia group A protein N terminus

  5. XM_021097002.1 → XP_020952661.1  Fanconi anemia group A protein isoform X7

    UniProtKB/TrEMBL
    A0A4X1TDQ0
    Conserved Domains (2) summary
    pfam03511
    Location:1286 → 1331
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:191 → 540
    Fanconi_A_N; Fanconi anaemia group A protein N terminus

  6. XM_021097000.1 → XP_020952659.1  Fanconi anemia group A protein isoform X5

    UniProtKB/TrEMBL
    A0A8D1CJX3, A0A8D1G3D5
    Conserved Domains (2) summary
    pfam03511
    Location:1161 → 1206
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:38 → 387
    Fanconi_A_N; Fanconi anaemia group A protein N terminus

  7. XM_021097001.1 → XP_020952660.1  Fanconi anemia group A protein isoform X6

    UniProtKB/TrEMBL
    A0A8D1VPH7, A0A8W4F9S6
    Related
    ENSSSCP00000075042.1, ENSSSCT00000099759.1
    Conserved Domains (2) summary
    pfam03511
    Location:1133 → 1178
    Fanconi_A; Fanconi anaemia group A protein
    pfam15865
    Location:38 → 387
    Fanconi_A_N; Fanconi anaemia group A protein N terminus
Nucleotide Protein
Heading Accession and Version

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