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RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [ Sus scrofa (pig) ]

Gene ID: 100620746, updated on 8-Mar-2024

Summary

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Official Symbol
RRP9provided by VGNC
Official Full Name
ribosomal RNA processing 9, U3 small nucleolar RNA binding proteinprovided by VGNC
Primary source
VGNC:VGNC:92468
See related
Ensembl:ENSSSCG00000023177
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 25.0), subcutaneous adipose (RPKM 16.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (34067517..34075425, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (37264060..37271970, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene IQ domain-containing protein F5 Neighboring gene IQ motif containing F1 Neighboring gene poly(ADP-ribose) polymerase family member 3 Neighboring gene G protein-coupled receptor 62 Neighboring gene poly(rC) binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-interacting protein 2
Names
ribosomal RNA processing 9, small subunit (SSU) processome component, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    34067517..34075425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003358455.4 → XP_003358503.1  U3 small nucleolar RNA-interacting protein 2

    UniProtKB/TrEMBL
    A0A4X1SF41, A0A8D1E0C7, I3LQS7
    Related
    ENSSSCP00000026458.2, ENSSSCT00000032341.3
    Conserved Domains (3) summary
    COG2319
    Location:139 → 403
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:139 → 439
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:149 → 197
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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