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DPPA2 developmental pluripotency associated 2 [ Sus scrofa (pig) ]

Gene ID: 100620381, updated on 8-Mar-2024

Summary

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Official Symbol
DPPA2provided by VGNC
Official Full Name
developmental pluripotency associated 2provided by VGNC
Primary source
VGNC:VGNC:108653
See related
Ensembl:ENSSSCG00000031524
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (150186833..150200612)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (159290030..159303777)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256428 Neighboring gene developmental pluripotency associated 4 Neighboring gene uncharacterized LOC110256429 Neighboring gene MORC family CW-type zinc finger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
developmental pluripotency-associated protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    150186833..150200612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003358822.4 → XP_003358870.1  developmental pluripotency-associated protein 2

    UniProtKB/TrEMBL
    A0A4X1T959, A0A8D0HY71, A0A8D0RST8, I3LA40
    Related
    ENSSSCP00000020906.2, ENSSSCT00000032043.4
    Conserved Domains (2) summary
    pfam14047
    Location:211 → 277
    DCR; Dppa2/4 conserved region
    pfam14049
    Location:125 → 206
    Dppa2_A; Dppa2/4 conserved region in higher vertebrates
Nucleotide Protein
Heading Accession and Version

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