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Noc4l NOC4 like [ Mus musculus (house mouse) ]

Gene ID: 100608, updated on 9-May-2024

Summary

Official Symbol
Noc4lprovided by MGI
Official Full Name
NOC4 likeprovided by MGI
Primary source
MGI:MGI:2140843
See related
Ensembl:ENSMUSG00000033294 AllianceGenome:MGI:2140843
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in ribosome biogenesis. Predicted to be located in nucleoplasm. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and immune system. Orthologous to human NOC4L (nucleolar complex associated 4 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E14.5 (RPKM 36.6), ovary adult (RPKM 34.0) and 28 other tissues See more
Orthologs
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Genomic context

See Noc4l in Genome Data Viewer
Location:
5 F; 5 53.69 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (110796285..110801248, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (110648419..110653382, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A630023P12 gene Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene STARR-seq mESC enhancer starr_13961 Neighboring gene DEAD box helicase 51 Neighboring gene microRNA 7026 Neighboring gene E1A binding protein p400

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC28606

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of Noc4p-Nop14p complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
nucleolar complex protein 4 homolog
Names
NOC4 protein homolog
NOC4-like protein
nucleolar complex associated 4 homolog
nucleolar complex-associated protein 4-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153570.2NP_705798.2  nucleolar complex protein 4 homolog

    See identical proteins and their annotated locations for NP_705798.2

    Status: PROVISIONAL

    Source sequence(s)
    AK052601
    Consensus CDS
    CCDS19527.1
    UniProtKB/Swiss-Prot
    Q8BHY2, Q8R1F7
    UniProtKB/TrEMBL
    Q3T9T2, Q3UKH4
    Related
    ENSMUSP00000038263.6, ENSMUST00000042147.6
    Conserved Domains (1) summary
    pfam03914
    Location:305453
    CBF; CBF/Mak21 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    110796285..110801248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)